Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109222562_109321779_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109222562 - 109321779

Intron Length:

99218

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TGCTCGAACCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTAAA

U12 Branch Point Sequence:

TGTGCTCGAACC

Flanking Amino Acid:

ANSSPASTTKCRALMSLVSW

Intron Amino Acid Position:

114

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

87.4

26.6

Major BPS

52.4

0.06

1.3

55.6

40.2

Major PPT

60.6

0.24

51.2

41.9

Minor 5ss

41.1

-1

3.2

58.9

39.4

Minor BPS

-0

1.9

64.77

40.6

Associated Gene:

Gene:

KLHL29

Ensembl Gene ID:

ENSAPLG00000012405

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044377

109079696 - 109463043

383348

ENSAPLT00000026622

109079696 - 109463014

383319

ENSAPLT00000012913

109166131 - 109463043

296913