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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109222562_109329772_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109222562 - 109329772
Intron Length:
107211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATTTTGTATTT
Flanking Amino Acid:
ANSSPASTTKAPCISKTENQ
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
87.4
26.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
71.4
0.48
0.9
69.1
31.5
Minor 5ss
41.1
-1
3.2
58.9
39.4
Minor BPS
48.2
-0
2.2
71.82
40.2

Associated Gene:

Gene:
KLHL29
Ensembl Gene ID:
ENSAPLG00000012405
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031960
109143384 - 109463043
319660