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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10928601_10933455_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10928601 - 10933455
Intron Length:
4855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTATAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCCTATAAAA
Flanking Amino Acid:
GPLGVLRFKLGVITRGQLGL
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
66.7
0.38
1.1
68.9
34.8
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
60.3
0.32
1.7
75.43
35.1

Associated Gene:

Gene:
WDPCP
Ensembl Gene ID:
ENSAPLG00000010025
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010436
10878452 - 10984224
105773