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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109331216_109398093_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109331216 - 109398093
Intron Length:
66878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AACCCTGGCACT
Flanking Amino Acid:
YEFTDPWHPKEMLKELNQQR
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
64.3
47.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
81.9
0.72
0.8
76.3
32.3
Minor 5ss
30.2
-2.3
3.2
38.6
46.5
Minor BPS
38.3
-0.8
2.3
53.52
41.8

Associated Gene:

Gene:
KLHL29
Ensembl Gene ID:
ENSAPLG00000012405
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026622
109079696 - 109463014
383319
ENSAPLT00000012913
109166131 - 109463043
296913
ENSAPLT00000044377
109079696 - 109463043
383348
ENSAPLT00000031960
109143384 - 109463043
319660