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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10933645_10936280_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10933645 - 10936280
Intron Length:
2636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGAACTCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTGTTTGAACT
Flanking Amino Acid:
LKQKLTPDREAQLEASLGTF
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.4
0.53
1
65.7
40.6
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
60.7
0.41
1.5
76.88
39.8

Associated Gene:

Gene:
WDPCP
Ensembl Gene ID:
ENSAPLG00000010025
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010436
10878452 - 10984224
105773