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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10936405_10954564_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10936405 - 10954564
Intron Length:
18160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TTGCCCTCAGCA
Flanking Amino Acid:
YARRFFHHLLRYQRFEKAFL
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.3
29.2
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
92.6
0.96
0.6
88.3
21.3
Minor 5ss
26.9
-2.7
3.1
33.8
42.3
Minor BPS
55.6
0.17
1.8
69.56
42.4

Associated Gene:

Gene:
WDPCP
Ensembl Gene ID:
ENSAPLG00000010025
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010436
10878452 - 10984224
105773