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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109398233_109411570_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109398233 - 109411570
Intron Length:
13338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCCTT
5'SS Class:
major
3'SS Sequence:
CTGCTGTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGTCCGTAATT
Flanking Amino Acid:
CSLYFKDLIKRSPRDSSRSG
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
66.5
44.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
69.4
0.44
1
62
43.3
Minor 5ss
46.3
-0.4
2.8
65.7
45.4
Minor BPS
64.9
0.54
2
82.03
40

Associated Gene:

Gene:
KLHL29
Ensembl Gene ID:
ENSAPLG00000012405
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026622
109079696 - 109463014
383319
ENSAPLT00000012913
109166131 - 109463043
296913
ENSAPLT00000044377
109079696 - 109463043
383348
ENSAPLT00000031960
109143384 - 109463043
319660