About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109411771_109417404_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109411771 - 109417404
Intron Length:
5634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGCCTTTTATT
Flanking Amino Acid:
TFCKVCVSFLEKQLTASNCL
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.8
0.67
0.8
77.9
30.9
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
61
0.43
1.6
76.99
39.9

Associated Gene:

Gene:
KLHL29
Ensembl Gene ID:
ENSAPLG00000012405
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044377
109079696 - 109463043
383348
ENSAPLT00000031960
109143384 - 109463043
319660
ENSAPLT00000026622
109079696 - 109463014
383319
ENSAPLT00000012913
109166131 - 109463043
296913