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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109417665_109429221_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109417665 - 109429221
Intron Length:
11557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGCTAT
U12 Branch Point Sequence:
TTTTTCTCCCCT
Flanking Amino Acid:
IKKDAAIRAQYAAELLAVVR
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
46.4
-0.2
1.5
44.2
48.3
Major PPT
81.1
0.7
0.7
75.4
26.7
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
42
-0.5
3.7
79.4
43

Associated Gene:

Gene:
KLHL29
Ensembl Gene ID:
ENSAPLG00000012405
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044377
109079696 - 109463043
383348
ENSAPLT00000031960
109143384 - 109463043
319660
ENSAPLT00000026622
109079696 - 109463014
383319
ENSAPLT00000012913
109166131 - 109463043
296913