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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109429421_109431968_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109429421 - 109431968
Intron Length:
2548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAA
5'SS Class:
major
3'SS Sequence:
TGTTGAATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTTTTTAAAT
Flanking Amino Acid:
TPRTRPRLSAGVAEVIVLVG
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
38.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.3
0.35
1
56.1
43.6
Minor 5ss
29.4
-2.4
3.3
37.9
46.9
Minor BPS
67.5
0.63
1.4
77.65
38.8

Associated Gene:

Gene:
KLHL29
Ensembl Gene ID:
ENSAPLG00000012405
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044377
109079696 - 109463043
383348
ENSAPLT00000031960
109143384 - 109463043
319660
ENSAPLT00000026622
109079696 - 109463014
383319
ENSAPLT00000012913
109166131 - 109463043
296913