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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109444030_109452106_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109444030 - 109452106
Intron Length:
8077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCCATTGACA
Flanking Amino Acid:
SWSFIESPMIDNKYAPAVTL
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
68.2
43
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76.7
0.6
1
72.8
36.5
Minor 5ss
31.4
-2.1
3.7
47.2
48.2
Minor BPS
69.9
0.62
1.6
81.81
32.3

Associated Gene:

Gene:
KLHL29
Ensembl Gene ID:
ENSAPLG00000012405
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012913
109166131 - 109463043
296913
ENSAPLT00000044377
109079696 - 109463043
383348
ENSAPLT00000031960
109143384 - 109463043
319660