About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109475945_109477473_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109475945 - 109477473
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGTTG
5'SS Class:
major
3'SS Sequence:
GTGTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATGTATAATT
Flanking Amino Acid:
RDYDKSQLIEEMERTVHVFE
Intron Amino Acid Position:
1378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
68.4
38.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.9
0.74
0.9
77.3
37
Minor 5ss
35
-1.7
3.4
46.5
48.8
Minor BPS
54.2
0.21
2
77.42
39.4

Associated Gene:

Gene:
ATAD2B
Ensembl Gene ID:
ENSAPLG00000012458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045611
109475889 - 109553259
77371
ENSAPLT00000035159
109475889 - 109553259
77371
ENSAPLT00000013007
109475903 - 109546338
70436