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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109481151_109495447_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109481151 - 109495447
Intron Length:
14297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTAATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TCCTTTGTAATT
Flanking Amino Acid:
VWPNSANKCAFRIRRKSRRR
Intron Amino Acid Position:
1060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
77
31.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77
0.61
1
74.5
39.2
Minor 5ss
34
-1.8
2.7
42.8
36.9
Minor BPS
51.9
0.14
2
69.97
42.5

Associated Gene:

Gene:
ATAD2B
Ensembl Gene ID:
ENSAPLG00000012458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045611
109475889 - 109553259
77371
ENSAPLT00000013007
109475903 - 109546338
70436