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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109481151_109500320_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109481151 - 109500320
Intron Length:
19170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTAATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TCCTTTGTAATT
Flanking Amino Acid:
EEIKEARRKRVRIRRKSRRR
Intron Amino Acid Position:
1066

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77
0.61
1
74.5
39.2
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
51.9
0.14
2
69.97
42.5

Associated Gene:

Gene:
ATAD2B
Ensembl Gene ID:
ENSAPLG00000012458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035159
109475889 - 109553259
77371