Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109510730_109512710_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109510730 - 109512710

Intron Length:

1981

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTGAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTGTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TTAATTGTAACT

Flanking Amino Acid:

AIHKPYLHFTMSAYHQPTSY

Intron Amino Acid Position:

684

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

83.4

Major BPS

84.4

0.85

34.5

Major PPT

81.8

0.72

0.9

Minor 5ss

35.6

-1.6

3.5

53.7

43.8

Minor BPS

54.6

0.22

76.79

39.9

Associated Gene:

Gene:

ATAD2B

Ensembl Gene ID:

ENSAPLG00000012458

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045611

109475889 - 109553259

77371

ENSAPLT00000035159

109475889 - 109553259

77371

ENSAPLT00000013007

109475903 - 109546338

70436