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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109521875_109522803_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109521875 - 109522803
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
EFLFNLPDQKARKHILQIHT
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.9
0.52
1
72.8
40.7
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
ATAD2B
Ensembl Gene ID:
ENSAPLG00000012458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045611
109475889 - 109553259
77371
ENSAPLT00000035159
109475889 - 109553259
77371
ENSAPLT00000013007
109475903 - 109546338
70436