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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109522964_109523949_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109522964 - 109523949
Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTATTC
5'SS Class:
major
3'SS Sequence:
AACTCTCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAAAA
Flanking Amino Acid:
VRSSRQDQIHSSIVSTLLAL
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
69
36.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
73.5
0.53
0.8
70.4
35.3
Minor 5ss
41.5
-0.9
3.3
59.7
44.9
Minor BPS
65.1
0.47
1.5
77.07
33.3

Associated Gene:

Gene:
ATAD2B
Ensembl Gene ID:
ENSAPLG00000012458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035159
109475889 - 109553259
77371
ENSAPLT00000013007
109475903 - 109546338
70436
ENSAPLT00000045611
109475889 - 109553259
77371