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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109527910_109529617_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109527910 - 109529617
Intron Length:
1708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
GCTATTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGCTATTTAAAT
Flanking Amino Acid:
HRSPARRSHIRRKKHAIHSS
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
62.6
0.29
1
58.8
41
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
60.7
0.41
1.6
74.96
41.5

Associated Gene:

Gene:
ATAD2B
Ensembl Gene ID:
ENSAPLG00000012458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013007
109475903 - 109546338
70436
ENSAPLT00000045611
109475889 - 109553259
77371
ENSAPLT00000035159
109475889 - 109553259
77371