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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109529694_109530254_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109529694 - 109530254
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTACTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTCTCTTACTC
Flanking Amino Acid:
TVERYQAPPIVPAHQKKREN
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81
0.7
0.8
80.8
30.1
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
57.7
0.22
1.6
66.76
39.6

Associated Gene:

Gene:
ATAD2B
Ensembl Gene ID:
ENSAPLG00000012458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045611
109475889 - 109553259
77371
ENSAPLT00000035159
109475889 - 109553259
77371
ENSAPLT00000013007
109475903 - 109546338
70436