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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109530372_109531673_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109530372 - 109531673
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATT
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTCTCTCCACC
Flanking Amino Acid:
HEVSTEGEEEESQEEDGDIE
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.2
33.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
67.5
0.39
0.8
61.7
27.4
Minor 5ss
44.3
-0.6
3.2
65.5
45.8
Minor BPS
53.1
0.08
2
71.76
39.3

Associated Gene:

Gene:
ATAD2B
Ensembl Gene ID:
ENSAPLG00000012458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045611
109475889 - 109553259
77371
ENSAPLT00000035159
109475889 - 109553259
77371
ENSAPLT00000013007
109475903 - 109546338
70436