Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109531783_109532319_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109531783 - 109532319

Intron Length:

537

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTGCA

5'SS Class:

major

3'SS Sequence:

ACTTTTATTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

GTTACTTTTATT

Flanking Amino Acid:

RLRMWTDTEFENMDMYSRVK

Intron Amino Acid Position:

155

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

1.1

69.8

34.3

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

83.3

0.75

0.8

77.2

35.1

Minor 5ss

35.5

-1.6

3.2

47.5

42.3

Minor BPS

60.8

0.42

1.6

77.32

39.1

Associated Gene:

Gene:

ATAD2B

Ensembl Gene ID:

ENSAPLG00000012458

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045611

109475889 - 109553259

77371

ENSAPLT00000035159

109475889 - 109553259

77371

ENSAPLT00000013007

109475903 - 109546338

70436