About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109532423_109534565_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109532423 - 109534565
Intron Length:
2143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GCATATATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
QSLLFDQLVNSTAEAVLQEM
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
68.8
42.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
66.9
0.38
1
63.1
42.4
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
ATAD2B
Ensembl Gene ID:
ENSAPLG00000012458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045611
109475889 - 109553259
77371
ENSAPLT00000035159
109475889 - 109553259
77371
ENSAPLT00000013007
109475903 - 109546338
70436