Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109535809_109537849_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109535809 - 109537849

Intron Length:

2041

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTTGG

5'SS Class:

strong_major

3'SS Sequence:

AATTGTTTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTTTTCTAATCT

Flanking Amino Acid:

EEWSISTGQSRLTSQPGATL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

1.1

69.7

43.7

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

70.8

0.47

0.9

62.5

43.4

Minor 5ss

45.1

-0.5

2.6

58.7

45.8

Minor BPS

64.5

0.53

1.9

87.15

38.9

Associated Gene:

Gene:

ATAD2B

Ensembl Gene ID:

ENSAPLG00000012458

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045611

109475889 - 109553259

77371

ENSAPLT00000035159

109475889 - 109553259

77371

ENSAPLT00000013007

109475903 - 109546338

70436