Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10954629_10960448_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10954629 - 10960448

Intron Length:

5820

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

TTTATTTCCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTTCTTTTATT

Flanking Amino Acid:

VDIGARDLFMDIHYLALDKG

Intron Amino Acid Position:

573

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

73.2

37.4

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

73.4

0.53

74.9

33.7

Minor 5ss

31.6

-2.1

2.9

39.6

39.8

Minor BPS

75.6

0.89

1.5

91.64

31.3

Associated Gene:

Gene:

WDPCP

Ensembl Gene ID:

ENSAPLG00000010025

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010436

10878452 - 10984224

105773