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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109566227_109568468_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109566227 - 109568468
Intron Length:
2242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTACTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTGTTCTTACTC
Flanking Amino Acid:
CMSPTTVKNQVDVIIKLWKN
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
78
0.63
0.8
69.6
36.4
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
65.5
0.47
1.6
73.21
38.6

Associated Gene:

Gene:
UBXN2A
Ensembl Gene ID:
ENSAPLG00000012737
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013257
109564602 - 109577603
13002