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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109570282_109574869_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109570282 - 109574869
Intron Length:
4588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGGCTTTTATTT
Flanking Amino Acid:
PFSGHGYRLGSATPRIVSKV
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.9
0.87
0.7
81.1
35.5
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
50.3
0.09
1.5
65.14
40.2

Associated Gene:

Gene:
UBXN2A
Ensembl Gene ID:
ENSAPLG00000012737
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013257
109564602 - 109577603
13002