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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109593272_109596538_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109593272 - 109596538
Intron Length:
3267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
CATGTGCTAATT
Flanking Amino Acid:
KWTKMGRLMPWMLACTPFTA
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
86.6
0.82
0.7
81.2
30
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
42.8
-0.4
2.3
60.62
43.7

Associated Gene:

Gene:
MFSD2B
Ensembl Gene ID:
ENSAPLG00000012916
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013463
109589428 - 109620316
30889