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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109598118_109601763_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109598118 - 109601763
Intron Length:
3646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
CTTCCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATCCTGAATG
Flanking Amino Acid:
QKERDSATAYRMTMEVLGTL
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.3
63.5
42.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.7
0.78
0.7
76.8
31.9
Minor 5ss
32.7
-2
3.3
44.7
43.5
Minor BPS
65.1
0.34
1.5
65.17
42.8

Associated Gene:

Gene:
MFSD2B
Ensembl Gene ID:
ENSAPLG00000012916
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013463
109589428 - 109620316
30889