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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10960552_10984090_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10960552 - 10984090
Intron Length:
23539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCCGTCTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TCCGTCTTAACA
Flanking Amino Acid:
IDAESITTGIGLLGQSEEED
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
86.3
28.9
Major BPS
75
0.62
1
65.3
41.5
Major PPT
73.5
0.53
0.9
68.8
36
Minor 5ss
39.6
-1.2
3.2
55.5
42.8
Minor BPS
67.9
0.56
1.4
70.02
42.9

Associated Gene:

Gene:
WDPCP
Ensembl Gene ID:
ENSAPLG00000010025
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010436
10878452 - 10984224
105773