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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109606610_109606703_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109606610 - 109606703
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
CTATTCCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATTGTTATTT
Flanking Amino Acid:
ILFFGVKEKDDPYALNSDRA
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
73.9
30.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.4
0.57
0.8
73.8
31
Minor 5ss
38.4
-1.3
3.1
47.6
42.6
Minor BPS
48.4
-0
2.2
70.41
41.1

Associated Gene:

Gene:
MFSD2B
Ensembl Gene ID:
ENSAPLG00000012916
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013463
109589428 - 109620316
30889