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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109606826_109609180_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109606826 - 109609180
Intron Length:
2355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCAATTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ATATCTTCAATT
Flanking Amino Acid:
SFLLISTAVQLEQSNFVLFC
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
71
0.47
1
66
39.3
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
66.9
0.61
1.5
79.57
36.5

Associated Gene:

Gene:
MFSD2B
Ensembl Gene ID:
ENSAPLG00000012916
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013463
109589428 - 109620316
30889