Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109609272_109611000_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

109609272 - 109611000

Intron Length:

1729

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTACTTCTC

5'SS Class:

weak_major

3'SS Sequence:

TTGTAGGTATCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TTTTTGTTAATT

Flanking Amino Acid:

QYLVVTILVSSAVSIPFWQK

Intron Amino Acid Position:

299

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.14

1.2

54.8

42.3

Major BPS

84.4

0.85

34.5

Major PPT

65.5

0.35

1.1

62.9

Minor 5ss

40.4

-1.1

3.3

58.9

39.9

Minor BPS

0.74

91.07

32.9

Associated Gene:

Gene:

MFSD2B

Ensembl Gene ID:

ENSAPLG00000012916

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013463

109589428 - 109620316

30889