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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109611075_109616608_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109611075 - 109616608
Intron Length:
5534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTTAT
U12 Branch Point Sequence:
TTATGTGTACTT
Flanking Amino Acid:
GKKCAACGISWMIPFAVMLV
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
74.5
37.6
Major BPS
64.7
0.37
1.2
55.4
41.7
Major PPT
85.5
0.8
0.7
84.4
23.4
Minor 5ss
39.2
-1.2
2.9
49.4
46.6
Minor BPS
43.5
-0.4
2.4
67.65
44.2

Associated Gene:

Gene:
MFSD2B
Ensembl Gene ID:
ENSAPLG00000012916
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013463
109589428 - 109620316
30889