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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109632151_109634699_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109632151 - 109634699
Intron Length:
2549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGAATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
CTCTCTTGAATT
Flanking Amino Acid:
EPSFINITYQKQLSRNDSDE
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
76.8
0.6
0.9
69
40.7
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
65
0.55
1.4
76.06
41.4

Associated Gene:

Gene:
WDCP
Ensembl Gene ID:
ENSAPLG00000013065
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013598
109629993 - 109636579
6587