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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109654168_109662696_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109654168 - 109662696
Intron Length:
8529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CATGCGTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
EPPVVHITYQKCFSNGAVTE
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
61.3
0.25
1.1
59.7
40.5
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013078
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013617
109650137 - 109664613
14477