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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109679865_109718128_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109679865 - 109718128
Intron Length:
38264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAA
U12 Branch Point Sequence:
TCAGACTGAAGC
Flanking Amino Acid:
KGQTCVVHYTGMLQNGKKFD
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
56.6
0.16
1.2
49.3
38
Major PPT
75.7
0.58
1
72.5
37.6
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
44.7
-0.4
2
52.88
44.2

Associated Gene:

Gene:
FKBP1B
Ensembl Gene ID:
ENSAPLG00000030383
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046724
109677066 - 109720557
43492