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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109718242_109720428_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
109718242 - 109720428
Intron Length:
2187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAAGA
5'SS Class:
strong_major
3'SS Sequence:
ACCCAAAACCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ACACCCAAAACC
Flanking Amino Acid:
IKGFEEGVTQMSLGQRAKLT
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.9
39.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
51.6
0.04
1
40.5
36.4
Minor 5ss
31.8
-2.1
3.1
40.8
45
Minor BPS
46.9
-0.2
1.9
56.3
41.6

Associated Gene:

Gene:
FKBP1B
Ensembl Gene ID:
ENSAPLG00000030383
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046724
109677066 - 109720557
43492