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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109746967_109747550_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109746967 - 109747550
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CCATCTTTCACT
Flanking Amino Acid:
ILDRENYFVREVDRYLRHND
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
71.4
0.48
0.9
70.7
34.5
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
59.6
0.38
1.8
71.91
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013321
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028298
109741668 - 109751378
9711
ENSAPLT00000013866
109741668 - 109751378
9711