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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109754778_109754884_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109754778 - 109754884
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AGGGATTTCATT
Flanking Amino Acid:
ATELKACKPNGKSNPYCEIS
Intron Amino Acid Position:
1019

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.2
39.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
70.2
0.46
0.9
68.5
37.3
Minor 5ss
28
-2.5
3
33.4
41.6
Minor BPS
43.1
-0.4
1.9
55.26
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013325
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036827
109753143 - 109784970
31828
ENSAPLT00000034290
109753143 - 109784970
31828
ENSAPLT00000029966
109753143 - 109757202
4060
ENSAPLT00000013987
109753143 - 109785296
32154
ENSAPLT00000047373
109753143 - 109785437
32295