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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109754969_109755128_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109754969 - 109755128
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAAGT
5'SS Class:
major
3'SS Sequence:
TTGTCGTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
AATCCATTTATT
Flanking Amino Acid:
EKKKREKAYQARSQKTSGIG
Intron Amino Acid Position:
991

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
66.6
44.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
77.1
0.61
0.9
69
41.8
Minor 5ss
39.7
-1.2
3.2
58.7
45.4
Minor BPS
49.9
0.08
1.9
70.6
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013325
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036827
109753143 - 109784970
31828
ENSAPLT00000034290
109753143 - 109784970
31828
ENSAPLT00000029966
109753143 - 109757202
4060
ENSAPLT00000013987
109753143 - 109785296
32154
ENSAPLT00000047373
109753143 - 109785437
32295