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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109755212_109755736_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109755212 - 109755736
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCACCAT
U12 Branch Point Sequence:
CAGCGCTCACCA
Flanking Amino Acid:
YTLKTDNINERTAWVQKIKA
Intron Amino Acid Position:
963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.6
38.9
Major BPS
53
0.08
1.4
63
42.7
Major PPT
85.6
0.8
0.8
80.7
31.3
Minor 5ss
31.1
-2.2
2.7
37.6
40
Minor BPS
40.5
-0.7
2.1
45.92
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013325
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029966
109753143 - 109757202
4060
ENSAPLT00000013987
109753143 - 109785296
32154
ENSAPLT00000047373
109753143 - 109785437
32295
ENSAPLT00000036827
109753143 - 109784970
31828
ENSAPLT00000034290
109753143 - 109784970
31828