About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109755859_109756730_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109755859 - 109756730
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CACTGCTACACT
Flanking Amino Acid:
SNSQFKMYKMPVFLNEVLVK
Intron Amino Acid Position:
923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
71.2
0.53
1
61
37.5
Major PPT
87.7
0.85
0.6
85.5
21.9
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
43.2
-0.4
2.4
60.03
49.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013325
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036827
109753143 - 109784970
31828
ENSAPLT00000034290
109753143 - 109784970
31828
ENSAPLT00000029966
109753143 - 109757202
4060
ENSAPLT00000013987
109753143 - 109785296
32154
ENSAPLT00000047373
109753143 - 109785437
32295