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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109756944_109757358_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109756944 - 109757358
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCTGCA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
CTGCCGCTAATG
Flanking Amino Acid:
SHVQCEGLAEQPVFNSLTNC
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.2
66
40.2
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
37.1
-1.5
3.4
50.2
46.2
Minor BPS
42.9
-0.6
2.3
49.05
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013325
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047373
109753143 - 109785437
32295
ENSAPLT00000036827
109753143 - 109784970
31828
ENSAPLT00000034290
109753143 - 109784970
31828
ENSAPLT00000013987
109753143 - 109785296
32154