Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109757527_109757695_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109757527 - 109757695

Intron Length:

169

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTGAGTACC

5'SS Class:

major

3'SS Sequence:

TTTTCTGCACCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCCCAT

U12 Branch Point Sequence:

TTTTTCTGCACC

Flanking Amino Acid:

ITRYPLIIKSILENTPENHP

Intron Amino Acid Position:

796

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.7

0.49

1.1

67.9

37.3

Major BPS

59.9

0.25

1.3

70.1

Major PPT

0.61

0.9

70.9

39.7

Minor 5ss

33.5

-1.9

2.7

39.1

38.9

Minor BPS

62.1

0.36

1.9

78.77

36.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013325

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047373

109753143 - 109785437

32295

ENSAPLT00000036827

109753143 - 109784970

31828

ENSAPLT00000034290

109753143 - 109784970

31828

ENSAPLT00000013987

109753143 - 109785296

32154