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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109758791_109759391_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109758791 - 109759391
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTGAT
U12 Branch Point Sequence:
TGGATGGTGATT
Flanking Amino Acid:
ELIMSNTKLLKALRVRKKTG
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
66.1
0.4
1.3
57.1
49.4
Major PPT
88.7
0.87
0.7
81.1
30.9
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
38.4
-0.8
2.4
55.08
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013325
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047373
109753143 - 109785437
32295
ENSAPLT00000036827
109753143 - 109784970
31828
ENSAPLT00000034290
109753143 - 109784970
31828
ENSAPLT00000013987
109753143 - 109785296
32154