About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109759499_109760374_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109759499 - 109760374
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTTTTTTTGACC
Flanking Amino Acid:
YMDDLQLVLEVFQKPMADSG
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.6
33.4
Major BPS
84.6
0.86
1
74
41.2
Major PPT
79.3
0.66
0.9
73.7
35.7
Minor 5ss
34.2
-1.8
3.2
47.6
47.9
Minor BPS
78.9
0.89
1
84.85
26.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013325
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013987
109753143 - 109785296
32154
ENSAPLT00000047373
109753143 - 109785437
32295
ENSAPLT00000036827
109753143 - 109784970
31828
ENSAPLT00000034290
109753143 - 109784970
31828