Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109760497_109772070_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109760497 - 109772070

Intron Length:

11574

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGCAAC

5'SS Class:

major

3'SS Sequence:

TTGCTTCTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTGAA

U12 Branch Point Sequence:

GGGATCTGAACT

Flanking Amino Acid:

MTTDSDPSQQWCADLQSLDT

Intron Amino Acid Position:

625

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.45

1.2

65.3

40.8

Major BPS

73.3

0.58

0.9

63.4

35.6

Major PPT

81.6

0.71

0.8

77.5

31.3

Minor 5ss

41.7

-0.9

2.9

52.9

44.1

Minor BPS

55.2

0.24

1.5

67.22

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013325

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034290

109753143 - 109784970

31828

ENSAPLT00000013987

109753143 - 109785296

32154

ENSAPLT00000047373

109753143 - 109785437

32295

ENSAPLT00000036827

109753143 - 109784970

31828