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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109772266_109773381_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109772266 - 109773381
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACCAAC
5'SS Class:
major
3'SS Sequence:
TGTTTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
GTTCTGCTAACT
Flanking Amino Acid:
SERTTSAAPSVVCQVIAMYD
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.2
68.4
38.7
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
84.8
0.78
0.7
84.8
30
Minor 5ss
39.8
-1.1
2.9
51.2
45.7
Minor BPS
48.3
-0
2.3
74.74
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013325
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047373
109753143 - 109785437
32295