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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109774035_109774221_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109774035 - 109774221
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ACTGTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGCAATTAATA
Flanking Amino Acid:
GKTGTINKKPEIAQVTTAYT
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
80.8
0.69
0.9
77.2
36.4
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
49.7
-0
1.8
61.81
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013325
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036827
109753143 - 109784970
31828
ENSAPLT00000034290
109753143 - 109784970
31828
ENSAPLT00000013987
109753143 - 109785296
32154
ENSAPLT00000047373
109753143 - 109785437
32295