About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109775753_109776625_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109775753 - 109776625
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TTTCTTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTTACTG
Flanking Amino Acid:
LLPGSEIKKEEPEAIYAAVK
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
69.9
41.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
86.7
0.83
0.7
82.1
28.2
Minor 5ss
37.6
-1.4
3.3
45.7
43.5
Minor BPS
68.5
0.44
1.6
74.4
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013325
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036827
109753143 - 109784970
31828
ENSAPLT00000034290
109753143 - 109784970
31828
ENSAPLT00000013987
109753143 - 109785296
32154